PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6640
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 275aa    MW: 31497.1 Da    PI: 10.4168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6640genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-091865555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               +++E++RR++++  f++L +llP +   p++ +  ++ + ++++YIksL+
  Tp57577_TGAC_v2_mRNA6640 18 RKIVEKNRRNQMKILFSKLNSLLPYN---PKEVVPLIDQVDETINYIKSLE 65
                              689**********************9...9999****************96 PP

2HLH20.49.4e-07225251430
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                                 +++E+ RR+++++ f++L +llPk 
  Tp57577_TGAC_v2_mRNA6640 225 ERKIVEKIRRNHMKNLFSKLNSLLPKY 251
                               5689*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.6041364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-101481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-41569No hitNo description
Gene3DG3DSA:4.10.280.101.2E-81683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-61865IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-41970IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-5219254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-5223251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDHNKQSVQP SSTIKVERKI VEKNRRNQMK ILFSKLNSLL PYNPKEVVPL IDQVDETINY  60
IKSLETNVKL AKEKKESLLR NKRSRSGCSS STCGAKGSIK SPKIEIHEMG FSLQIIVTCG  120
VDDQFIFYEI IRILNEENVE VISANSSLTG DSNFHIVHAE IPQSLFQFGG TKVSDRLKSF  180
VNGFKRNCVE RTKRXXXXXX XXXXXXXXXX XXXXXQPSSS STKVERKIVE KIRRNHMKNL  240
FSKLNSLLPK YNHKVLCFFP SRAYIYNGNN TIFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465113.15e-92helix loop helix DNA-binding domain protein
TrEMBLA0A072VCG25e-92A0A072VCG2_MEDTR; Helix loop helix DNA-binding domain protein
STRINGGLYMA12G12880.12e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-27bHLH family protein